MRIQC: individual T1w report

Summary

  • BIDS filename: sub-2059_ses-1_T1w.
  • Date and time: 2024-07-09, 02:37.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.7334595477035093
cnr1.8763280618033076
efc0.6735575700597679
fber211.87725350556624
fwhmavg4.646166666666667
fwhmx4.76309
fwhmy4.75874
fwhmz4.41667
icvscsf0.19868285981839467
icvsgm0.41225253744872997
icvswm0.38906460273287535
inumed1.545418620109558
inurange1.0129768848419187
qi10.0
qi20.005170028748512552
rpvecsf28.914232504337768
rpvegm14.276417167518336
rpvewm17.72062112894344
sizex192
sizey256
sizez256
snrcsf3.3875639333923435
snrgm9.249662585489569
snrtotal8.930752625762208
snrwm14.155031358404713
snrdcsf15.298226074501608
snrdgm26.516459443210803
snrdtotal25.14365367833373
snrdwm33.616275517288784
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.7126725593516534
summarybgmad19.48967866048435
summarybgmean44.99236197033928
summarybgmedian41.72295477613807
summarybgn2063304.0
summarybgp0518.757144052535295
summarybgp9583.03023876994848
summarybgstdv20.179256349969997
summarycsfk28.01178933252844
summarycsfmad125.103708081528
summarycsfmean464.48059371211696
summarycsfmedian455.10754780098796
summarycsfn25269.0
summarycsfp05286.2932513281703
summarycsfp95662.3194327913225
summarycsfstdv134.34389768158064
summarygmk-0.1404404451828123
summarygmmad86.50952227558864
summarygmmean795.4373189236561
summarygmmedian788.8392271623015
summarygmn16306.0
summarygmp05666.0604698322713
summarygmp95946.313505104743
summarygmstdv85.28041221853557
summarywmk0.3889449052505274
summarywmmad68.4064610692099
summarywmmean1004.6973758166093
summarywmmedian1000.0519434325397
summarywmn222191.0
summarywmp05896.4979597851634
summarywmp951127.403079368174
summarywmstdv70.64976881193259
tpmoverlapcsf0.15212179720401764
tpmoverlapgm0.4529404640197754
tpmoverlapwm0.48878705501556396
wm2max0.6728308746416836
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime09:02:11.555000
BaseResolution256
CoilCombinationMethodAdaptive Combine
CoilStringT:HEA;HEP
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber35451
DwellTime3e-06
EchoTime0.00164
FlipAngle7
ImageOrientationPatientDICOM[0.0226874, 0.999743, 3.31075e-08, -0.104502, 0.00237151, -0.994522]
ImageOrientationTextSag>Tra(6.0)>Cor(1.3)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.223
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressExposition Drive 1777,Boulder- 6392da-,Denver,US,80301
InstitutionNameIntermountain Neuroimaging Consortium
InstitutionalDepartmentNameDepartment
InversionTime1.2
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameTrioTim
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
NumberOfAverages5
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps255
PhaseResolution1
PixelBandwidth651
ProcedureStepDescriptionVMITTAL^frontalsub_200007
ProtocolNamemprage_5e
PulseSequenceDetails%CustomerSeq%\tfl_mgh_multiecho
ReceiveCoilNameHeadMatrix
ReconMatrixPE256
RefLinesPE32
RepetitionTime2.53
SAR0.0696291
ScanOptionsIR
ScanningSequenceGR\IR
SequenceNametfl3d5_ns
SequenceVariantSP\MP
SeriesDescriptionmprage_5e RMS
SeriesNumber3
ShimSetting[6775, 12605, -7166, -44, 314, -274, -21, 114]
SliceThickness1
SoftwareVersionssyngo MR B17
StationNameMRC35451
TxRefAmp344.708
md5sum5396ad39a2c98035915d4cb9ffc5c73b
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.